PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G012400.3
Common NameB456_005G012400, LOC105796355
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 139aa    MW: 15320.4 Da    PI: 9.1353
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G012400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.0001132671454
                        HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        d++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  Gorai.005G012400.3 32 DQVSERIAALQQLVSPY-----GKTDTASVLLEAMGYIRFL 67
                        78999*********999.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.691867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-52172No hitNo description
SuperFamilySSF474591.31E-102680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-72776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MMENKRNPFS VDHTGFTSLA SKRQKATKEK KDQVSERIAA LQQLVSPYGK TDTASVLLEA  60
MGYIRFLHEQ VKVLSAPYLQ TIPANSLQDD DQYSLRNRGL CLAPVSCTVG LARSNGADIW  120
APVKTTSPKF DEVISQFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2658603e-81GU265860.1 Gossypium hirsutum chromosome 14 SNP marker NG0207159 associated with bacterial blight resistance genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481480.11e-101PREDICTED: transcription factor bHLH113-like isoform X1
RefseqXP_012481481.11e-101PREDICTED: transcription factor bHLH113-like isoform X2
RefseqXP_012481484.11e-101PREDICTED: transcription factor bHLH113-like isoform X2
RefseqXP_012481485.11e-101PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ9LT675e-33BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A0D2N6J41e-101A0A0D2N6J4_G
TrEMBLA0A0D2PL831e-101A0A0D2PL83_G
STRINGPOPTR_0013s13050.17e-68(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.53e-59bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]